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DOI: 10.14569/IJACSA.2021.0121059
PDF

P Systems Implementation: A Model of Computing for Biological Mitochondrial Rules using Object Oriented Programming

Author 1: Mohammed M. Nasef
Author 2: Bishoy El-Aarag
Author 3: Amal Hashim
Author 4: Passent M. El Kafrawy

International Journal of Advanced Computer Science and Applications(IJACSA), Volume 12 Issue 10, 2021.

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Abstract: Membrane computing is a computational framework that depends on the behavior and structure of living cells. P systems are arising from the biological processes which occur in the living cells’ organelles in a non-deterministic and maximally parallel manner. This paper aims to build a powerful computational model that combines the rules of active and mobile membranes, called Mutual Dynamic Membranes (MDM). The proposed model will describe the biological mechanisms of the metabolic regulation of mitochondrial dynamics made by mitochondrial membranes. The behaviors of the proposed model regulate the mitochondrial fusion and fission processes based on the combination of P systems variants. The combination of different variants in our computational model and their high parallelism lead to provide the possibility for solving problems that belong to NP-complete classes in polynomial time in a more efficient way than other conventional methods. To evaluate this model, it was applied to solve the SAT problem and calculate a set of computational complexity results that approved the quality of our model. Another contribution of this paper, the biological models of mitochondrial is presented in the formal class relationship diagrams were designed and illustrated using Unified Modeling Language (UML). This mechanism will be used to define a new specification of membrane processes into Object-Oriented Programming (OOP) to add the functionality of a common programming methodology to solve a large category of NP-hard problems as an interesting initiative of future research.

Keywords: Computational biology; P systems; membranes fusion – fission; mitochondria; Mutual Dynamic Membranes (MDM); NP- complete problems

Mohammed M. Nasef, Bishoy El-Aarag, Amal Hashim and Passent M. El Kafrawy, “P Systems Implementation: A Model of Computing for Biological Mitochondrial Rules using Object Oriented Programming” International Journal of Advanced Computer Science and Applications(IJACSA), 12(10), 2021. http://dx.doi.org/10.14569/IJACSA.2021.0121059

@article{Nasef2021,
title = {P Systems Implementation: A Model of Computing for Biological Mitochondrial Rules using Object Oriented Programming},
journal = {International Journal of Advanced Computer Science and Applications},
doi = {10.14569/IJACSA.2021.0121059},
url = {http://dx.doi.org/10.14569/IJACSA.2021.0121059},
year = {2021},
publisher = {The Science and Information Organization},
volume = {12},
number = {10},
author = {Mohammed M. Nasef and Bishoy El-Aarag and Amal Hashim and Passent M. El Kafrawy}
}



Copyright Statement: This is an open access article licensed under a Creative Commons Attribution 4.0 International License, which permits unrestricted use, distribution, and reproduction in any medium, even commercially as long as the original work is properly cited.

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