The Science and Information (SAI) Organization
  • Home
  • About Us
  • Journals
  • Conferences
  • Contact Us

Publication Links

  • IJACSA
  • Author Guidelines
  • Publication Policies
  • Metadata Harvesting (OAI2)
  • Digital Archiving Policy

IJACSA

  • About the Journal
  • Call for Papers
  • Author Guidelines
  • Fees/ APC
  • Submit your Paper
  • Current Issue
  • Archives
  • Indexing
  • Editors
  • Reviewers
  • Apply as a Reviewer

IJARAI

  • About the Journal
  • Archives
  • Indexing & Archiving

Special Issues

  • Home
  • Archives
  • Call for Papers
  • Proposals
  • Guest Editors

Computing Conference

  • Home
  • Call for Papers
  • Submit your Paper/Poster
  • Register
  • Venue
  • Contact

Intelligent Systems Conference (IntelliSys)

  • Home
  • Call for Papers
  • Submit your Paper/Poster
  • Register
  • Venue
  • Contact

Future Technologies Conference (FTC)

  • Home
  • Call for Papers
  • Submit your Paper/Poster
  • Register
  • Venue
  • Contact

Future of Information and Communication Conference (FICC)

  • Home
  • Call for Papers
  • Submit your Paper/Poster
  • Register
  • Venue
  • Contact
  • Home
  • Call for Papers
  • Guidelines
  • Fees
  • Submit your Paper
  • Current Issue
  • Archives
  • Indexing
  • Editors
  • Reviewers
  • Subscribe

Article Details

Copyright Statement: This is an open access article licensed under a Creative Commons Attribution 4.0 International License, which permits unrestricted use, distribution, and reproduction in any medium, even commercially as long as the original work is properly cited.

Heterogeneous HW/SW FPGA-Based Embedded System for Database Sequencing Applications

Author 1: Talal Bonny

Download PDF

Digital Object Identifier (DOI) : 10.14569/IJACSA.2018.091030

Article Published in International Journal of Advanced Computer Science and Applications(IJACSA), Volume 9 Issue 10, 2018.

  • Abstract and Keywords
  • How to Cite this Article
  • {} BibTeX Source

Abstract: Database sequencing applications including sequence comparison, searching, and analysis are considered among the most computation power and time consumers. Heuristic algorithms suffer from sensitivity while traditional sequencing methods, require searching the whole database to find the most matched sequences, which requires high computation power and time. This paper introduces a dynamic programming technique based-on a measure of similarity between two sequential objects in the database using two components, namely frequency and mean. Additionally, database sequences that have the lowest scores in the comparison process were excluded such that the similarity algorithm between a query sequence and other database sequences is applied to meaningful parts of the database. The proposed technique was implemented and validated using a heterogeneous HW/SW FPGA-based embedded system platform. The implementation was partitioned into (1) hardware part (running on logic gates of FPGA) and (2) software part (running on ARM processor of FPGA). The validation study showed a significant reduction in computation time by accelerating the database sequencing processes by 60% comparing to traditional known methods.

Keywords: Database; sequence comparison; dynamic programming; FPGA

Talal Bonny, “Heterogeneous HW/SW FPGA-Based Embedded System for Database Sequencing Applications” International Journal of Advanced Computer Science and Applications(IJACSA), 9(10), 2018. http://dx.doi.org/10.14569/IJACSA.2018.091030

@article{Bonny2018,
title = {Heterogeneous HW/SW FPGA-Based Embedded System for Database Sequencing Applications},
journal = {International Journal of Advanced Computer Science and Applications},
doi = {10.14569/IJACSA.2018.091030},
url = {http://dx.doi.org/10.14569/IJACSA.2018.091030},
year = {2018},
publisher = {The Science and Information Organization},
volume = {9},
number = {10},
author = {Talal Bonny}
}


IJACSA

Upcoming Conferences

Future of Information and Communication Conference (FICC) 2023

2-3 March 2023

  • Hybrid | San Francisco

Computing Conference 2023

13-14 July 2023

  • Hybrid | London, UK

IntelliSys 2022

1-2 September 2022

  • Hybrid / Amsterdam

Future Technologies Conference (FTC) 2022

20-21 October 2022

  • Hybrid / Vancouver
The Science and Information (SAI) Organization
BACK TO TOP

Computer Science Journal

  • About the Journal
  • Call for Papers
  • Submit Paper
  • Indexing

Our Conferences

  • Computing Conference
  • Intelligent Systems Conference
  • Future Technologies Conference
  • Communication Conference

Help & Support

  • Contact Us
  • About Us
  • Terms and Conditions
  • Privacy Policy

© The Science and Information (SAI) Organization Limited. Registered in England and Wales. Company Number 8933205. All rights reserved. thesai.org