The Science and Information (SAI) Organization
  • Home
  • About Us
  • Journals
  • Conferences
  • Contact Us

Publication Links

  • IJACSA
  • Author Guidelines
  • Publication Policies
  • Digital Archiving Policy
  • Promote your Publication
  • Metadata Harvesting (OAI2)

IJACSA

  • About the Journal
  • Call for Papers
  • Editorial Board
  • Author Guidelines
  • Submit your Paper
  • Current Issue
  • Archives
  • Indexing
  • Fees/ APC
  • Reviewers
  • Apply as a Reviewer

IJARAI

  • About the Journal
  • Archives
  • Indexing & Archiving

Special Issues

  • Home
  • Archives
  • Proposals
  • Guest Editors
  • SUSAI-EE 2025
  • ICONS-BA 2025
  • IoT-BLOCK 2025

Future of Information and Communication Conference (FICC)

  • Home
  • Call for Papers
  • Submit your Paper/Poster
  • Register
  • Venue
  • Contact

Computing Conference

  • Home
  • Call for Papers
  • Submit your Paper/Poster
  • Register
  • Venue
  • Contact

Intelligent Systems Conference (IntelliSys)

  • Home
  • Call for Papers
  • Submit your Paper/Poster
  • Register
  • Venue
  • Contact

Future Technologies Conference (FTC)

  • Home
  • Call for Papers
  • Submit your Paper/Poster
  • Register
  • Venue
  • Contact
  • Home
  • Call for Papers
  • Editorial Board
  • Guidelines
  • Submit
  • Current Issue
  • Archives
  • Indexing
  • Fees
  • Reviewers
  • Subscribe

DOI: 10.14569/IJACSA.2020.0111019
PDF

An Investigative Study of Genetic Algorithms to Solve the DNA Assembly Optimization Problem

Author 1: Hachemi Bennaceur
Author 2: Meznah Almutairy
Author 3: Nora Alqhtani

International Journal of Advanced Computer Science and Applications(IJACSA), Volume 11 Issue 10, 2020.

  • Abstract and Keywords
  • How to Cite this Article
  • {} BibTeX Source

Abstract: This paper aims to highlight the motivations for investigating genetic algorithms to solve the DNA Fragments Assembly problem (DNA_FA). DNA_FA is an optimization problem that attempts to reconstruct the original DNA sequence by finding the shortest DNA sequence from a given set of fragments. We showed that the DNA_FA optimization problem is a special case of the two well-known optimization problems: The Traveling Salesman Problem (TSP) and the Quadratic Assignment Problem (QAP). TSP and QAP are important problems in the field of combinatorial optimization and for which there exists an abundant literature. Genetic Algorithms (GA) applied to these problems have led to very satisfactory results in practice. In the perspective of designing efficient genetic algorithms to solve DNA_FA we showed the existence of a polynomial-time reduction of DNA-FA into TSP and QAP enabling us to point out some technical similarities in terms of solutions and search space complexity. We then conceptually designed a genetic algorithm platform for solving the DNA-FA problem inspired from the existing efficient genetic algorithms in the literature solving TSP and QAP problems. This platform offers several ingredients enabling us to create several variants of GA solvers for the DNA assembly optimization problems.

Keywords: Genetic Algorithms; Traveling Salesman Problem; Quadratic Assignment Problem; DNA fragments assembly problem

Hachemi Bennaceur, Meznah Almutairy and Nora Alqhtani, “An Investigative Study of Genetic Algorithms to Solve the DNA Assembly Optimization Problem” International Journal of Advanced Computer Science and Applications(IJACSA), 11(10), 2020. http://dx.doi.org/10.14569/IJACSA.2020.0111019

@article{Bennaceur2020,
title = {An Investigative Study of Genetic Algorithms to Solve the DNA Assembly Optimization Problem},
journal = {International Journal of Advanced Computer Science and Applications},
doi = {10.14569/IJACSA.2020.0111019},
url = {http://dx.doi.org/10.14569/IJACSA.2020.0111019},
year = {2020},
publisher = {The Science and Information Organization},
volume = {11},
number = {10},
author = {Hachemi Bennaceur and Meznah Almutairy and Nora Alqhtani}
}



Copyright Statement: This is an open access article licensed under a Creative Commons Attribution 4.0 International License, which permits unrestricted use, distribution, and reproduction in any medium, even commercially as long as the original work is properly cited.

IJACSA

Upcoming Conferences

IntelliSys 2025

28-29 August 2025

  • Amsterdam, The Netherlands

Future Technologies Conference 2025

6-7 November 2025

  • Munich, Germany

Healthcare Conference 2026

21-22 May 2026

  • Amsterdam, The Netherlands

Computing Conference 2026

9-10 July 2026

  • London, United Kingdom

IntelliSys 2026

3-4 September 2026

  • Amsterdam, The Netherlands

Computer Vision Conference 2026

15-16 October 2026

  • Berlin, Germany
The Science and Information (SAI) Organization
BACK TO TOP

Computer Science Journal

  • About the Journal
  • Call for Papers
  • Submit Paper
  • Indexing

Our Conferences

  • Computing Conference
  • Intelligent Systems Conference
  • Future Technologies Conference
  • Communication Conference

Help & Support

  • Contact Us
  • About Us
  • Terms and Conditions
  • Privacy Policy

© The Science and Information (SAI) Organization Limited. All rights reserved. Registered in England and Wales. Company Number 8933205. thesai.org